Topology and Nematic Ordering II: Observable Critical Behavior

This paper is the second in a pair treating a new lattice model for nematic media. In addition to the familiar isotropic (I) and nematically ordered (N) phases, the phase diagram established in the previous paper (Paper I) contains a new, topologically ordered phase (T) occuring at large suppression of topological defects and weak nematic interactions. This paper (Paper II) is concerned with the experimental signatures of the proposed phase diagram. Specific heat, light scattering and magnetic susceptibility near both the N/T and I/T transitions are studied, and critical behavior determined. The singular dependences of the Frank constants ($K_1$, $K_2$, $K_3$) and the dielectric tensor anisotropy ($\Delta \epsilon$) on temperature upon approaching the N/T transition are also found.Comment: 10 pages, RevTeX 3.

Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing.

Marine populations of the threespine stickleback (Gasterosteus aculeatus) have repeatedly colonized and rapidly adapted to freshwater habitats, providing a powerful system to map the genetic architecture of evolved traits. Here, we developed and applied a binned genotyping-by-sequencing (GBS) method to build dense genome-wide linkage maps of sticklebacks using two large marine by freshwater F2 crosses of more than 350 fish each. The resulting linkage maps significantly improve the genome assembly by anchoring 78 new scaffolds to chromosomes, reorienting 40 scaffolds, and rearranging scaffolds in 4 locations. In the revised genome assembly, 94.6% of the assembly was anchored to a chromosome. To assess linkage map quality, we mapped quantitative trait loci (QTL) controlling lateral plate number, which mapped as expected to a 200-kb genomic region containing Ectodysplasin, as well as a chromosome 7 QTL overlapping a previously identified modifier QTL. Finally, we mapped eight QTL controlling convergently evolved reductions in gill raker length in the two crosses, which revealed that this classic adaptive trait has a surprisingly modular and nonparallel genetic basis

Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis

Ancient whole genome duplications have been implicated in the vertebrate and teleost radiations, and in the emergence of diverse angiosperm lineages, but the evolutionary response to such a perturbation is still poorly understood. The African clawed frog Xenopus laevis experienced a relatively recent tetraploidization {approx} 40 million years ago. Analysis of the considerable amount of EST sequence available for this species together with the genome sequence of the related diploid Xenopus tropicalis provides a unique opportunity to study the genomic response to whole genome duplication